- o -

• Observation() : Observation
• ObservationMatch() : ObservationMatch
• ok() : BSpline2d , FuzzyStringComparator::InputLine
• ok_() : ToolsDialog , TOPPASToolConfigDialog
• OMSFile() : OMSFile
• OMSFileLoad() : OMSFileLoad
• OMSFileStore() : OMSFileStore
• OMSSACSVFile() : OMSSACSVFile
• OMSSAXMLFile() : OMSSAXMLFile
• on_actionExit_triggered() : FLASHDeconvWizardBase , SwathWizardBase
• on_actionReport_new_issue_triggered() : FLASHDeconvWizardBase , SwathWizardBase
• on_actionVisit_FLASHDeconv_homepage_triggered() : FLASHDeconvWizardBase
• on_actionVisit_OpenSwath_homepage_triggered() : SwathWizardBase
• on_btn_pyresults_clicked() : SwathTabWidget
• on_btn_runPyProphet_clicked() : SwathTabWidget
• on_edit_advanced_parameters_clicked() : FLASHDeconvTabWidget , SwathTabWidget
• on_open_output_directory_clicked() : FLASHDeconvTabWidget
• on_pushButton_clicked() : SwathTabWidget
• on_run_fd_clicked() : FLASHDeconvTabWidget
• on_run_swath_clicked() : SwathTabWidget
• OnDiscMSExperiment() : OnDiscMSExperiment
• oneNB() : NeighborSeq::NeighborStats
• op_changed_() : DataFilterDialog
• open() : Bzip2Ifstream , GzipIfstream
• openAsNewWindow() : TOPPViewOpenDialog
• openContainingFolder() : TOPPASInputFileListVertex , TOPPASOutputVertex , TOPPASToolVertex
• openDatabase_() : SqliteConnector
• openExampleDialog() : TOPPASBase
• openFile() : INIFileEditorWindow , IndexedMzMLHandler , OnDiscMSExperiment , TOPPViewBase
• openFilesByDialog() : TOPPASBase , TOPPViewBase
• openFilesInTOPPView() : TOPPASBase
• openglwidget() : Plot3DCanvas
• openInputFileStream_() : FuzzyStringComparator
• openInTOPPView() : TOPPASScene , TOPPASToolVertex
• OpenMSLineEdit() : OpenMSLineEdit
• OpenMSOSInfo() : OpenMSOSInfo
• openOnlinePipelineRepository() : TOPPASBase
• OpenPepXLAlgorithm() : OpenPepXLAlgorithm
• OpenPepXLLFAlgorithm() : OpenPepXLLFAlgorithm
• openPreferences() : PlotWidget
• OpenSwath_Ind_Scores() : OpenSwath_Ind_Scores
• OpenSwath_Scores() : OpenSwath_Scores
• OpenSwathCalibrationWorkflow() : OpenSwathCalibrationWorkflow
• OpenSwathOSWWriter() : OpenSwathOSWWriter
• OpenSwathScoring() : OpenSwathScoring
• OpenSwathTSVWriter() : OpenSwathTSVWriter
• OpenSwathWorkflow() : OpenSwathWorkflow
• OpenSwathWorkflowBase() : OpenSwathWorkflowBase
• openToppasFile() : TOPPASBase
• openUniProtSiteWithAccession_() : SpectraIDViewTab
• operator double() : DataValue , ParamValue
• operator DoubleList() : DataValue
• operator float() : DataValue , ParamValue
• operator int() : DataValue , ParamValue
• operator IntList() : DataValue
• operator long double() : DataValue , ParamValue
• operator long int() : DataValue , ParamValue
• operator long long() : DataValue , ParamValue
• operator ParamValue() : DataValue
• operator RangeIntensity() : RangeBase
• operator RangeMobility() : RangeBase
• operator RangeMZ() : RangeBase
• operator RangeRT() : RangeBase
• operator short int() : DataValue , ParamValue
• operator std::string() : DataValue , ParamValue
• operator std::vector< double >() : ParamValue
• operator std::vector< int >() : ParamValue
• operator std::vector< std::string >() : ParamValue
• operator StringList() : DataValue
• operator uintptr_t() : IteratorWrapper< Iterator >
• operator unsigned int() : DataValue , ParamValue
• operator unsigned long int() : DataValue , ParamValue
• operator unsigned long long() : DataValue , ParamValue
• operator unsigned short int() : DataValue , ParamValue
• operator!=() : AASequence::ConstIterator , AASequence::Iterator , AASequence , AbsoluteQuantitationMethod , Acquisition , AcquisitionInfo , Area< N_DIM > , BaseFeature , BinnedSpectrum , ChargePair , ChromatogramPeak , ChromatogramSettings , ClusterProxyKD , ConsensusMap , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT > , ContactPerson , CVMappingRule , CVMappings , CVMappingTerm , CVReference , CVTerm , CVTerm::Unit , CVTermList , CVTermListInterface , DataFilters::DataFilter , DataProcessing , DateTime , DigestionEnzyme , DigestionEnzymeProtein , DimMapper< N_DIM > , DPosition< D, TCoordinateType > , Element , EmpiricalFormula , ExperimentalSettings , FeatureHandle , FeatureMap , Gradient , HashGrid< Cluster >::ConstIterator , HashGrid< Cluster >::Iterator , HPLC , ObservationMatchGroup , IMSElement , IMSIsotopeDistribution , IncludeExcludeTarget , Instrument , InstrumentSettings , AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT > , DIntervalBase< D > , Identification , IdentificationHit , IntensityIteratorWrapper< IteratorT > , SpectrumIdentification , IonDetector , IonSource , IsotopeDistribution , MassAnalyzer , MatchedIterator< CONT_T, TRAIT, CONST_T > , Histogram< ValueType, BinSizeType > , MetaInfo , MetaInfoInterface , MobilityPeak1D , MobilityPeak2D , Mobilogram , ModelDescription< D > , ModificationDefinition , ModificationDefinitionsSet , MRMFeatureQC::ComponentGroupQCs , MRMFeatureQC::ComponentQCs , MSChromatogram , MSExperiment , MSSpectrum , NASequence::ConstIterator , NASequence::Iterator , NASequence , OnDiscMSExperiment , Param::ParamIterator , Peak1D , Peak2D , PeakIndex , PeptideEvidence , PeptideHit , PeptideIdentification , Precursor , Product , ProteinHit , ProteinIdentification , ProteinIdentification::SearchParameters , RangeManager< RangeBases > , ReactionMonitoringTransition , Residue , ResidueModification , RichPeak2D , ScanWindow , Software , SourceFile , SpectrumSettings , StopWatch , TargetedExperiment , Interpretation , VersionInfo::VersionDetails
• operator&() : FlagSet< ENUM >
• operator&=() : FlagSet< ENUM >
• operator()() : _Bracket_accessor< _Val > , _Node_compare< _Val, _Acc, _Cmp > , always_true< _Tp > , squared_difference< _Tp, _Dist > , squared_difference_counted< _Tp, _Dist > , NucleicAcidSearchEngine::HasInvalidLength , AA , AccurateMassSearchEngine::CompareEntryAndMass_ , AverageLinkage , BaseFeature::QualityLess , BinnedSharedPeakCount , BinnedSpectralContrastAngle , BinnedSpectrumCompareFunctor , BinnedSumAgreeingIntensities , ChromatogramPeak::IntensityLess , ChromatogramPeak::PositionLess , ChromatogramPeak::RTLess , ClusterFunctor , CmpHypothesesByScore , CmpMassTraceByMZ , Colorizer , CompareMzTabMMatchRef , CompleteLinkage , ConfidenceScoring::GLM_ , ConfidenceScoring::RTNorm_ , ConsensusFeature::MapsLess , ConsensusFeature::SizeLess , DiaPrescore , DistanceMatrix< Value > , EGHTraceFitter::EGHTraceFunctor , EmgFitter1D::EgmFitterFunctor , EuclideanSimilarity , FeatureDistance , FeatureFinderAlgorithmMetaboIdent::FeatureCompare , FeatureFinderAlgorithmMetaboIdent::FeatureFilterQuality , FeatureFinderIdentificationAlgorithm::FeatureCompare , FeatureFinderIdentificationAlgorithm::FeatureFilterPeptides , FeatureFinderIdentificationAlgorithm::FeatureFilterQuality , FeatureFinderIdentificationAlgorithm::PeptideCompare , FeatureHandle::IndexLess , GaussTraceFitter::GaussTraceFunctor , HasActivationMethod< SpectrumType > , HasMetaValue< MetaContainer > , HasPrecursorCharge< SpectrumType > , HasScanMode< SpectrumType > , HasScanPolarity< SpectrumType > , IdentificationDataConverter::PepIDCompare , IdentificationDataConverter::StepOptCompare , AdductCompare , IDFilter::DigestionFilter , IDFilter::HasDecoyAnnotation< HitType > , IDFilter::HasGoodScore< HitType > , IDFilter::HasMatchingAccession< HitType > , IDFilter::HasMatchingAccessionUnordered< HitType > , IDFilter::HasMaxMetaValue< HitType > , IDFilter::HasMaxRank< HitType > , IDFilter::HasMetaValue< HitType > , IDFilter::HasMinMetaValue< HitType > , IDFilter::HasNoHits< IdentificationType > , IDFilter::PeptideDigestionFilter , IDRipper::RipFileIdentifierIdxComparator , IMSAlphabet::MassSortingCriteria_ , Index , InIntensityRange< PeakType > , InMSLevelRange< SpectrumType > , InMzRange< PeakType > , InPrecursorMZRange< SpectrumType > , InRTRange< SpectrumType > , IDBoostGraph::GetPosteriorVisitor , IDBoostGraph::GetScoreTgTVisitor , IDBoostGraph::LabelVisitor , IDBoostGraph::PrintAddressVisitor< CharT > , IDBoostGraph::SetPosteriorVisitor , Looper< grid_size, grid_size, EvalResult, Tuple, TupleTypes... > , Looper< param_index, grid_size, EvalResult, Tuple, FirstTupleType, TupleTypes... > , IsEmptySpectrum< SpectrumType > , IsInCollisionEnergyRange< SpectrumType > , IsInIsolationWindow< SpectrumType > , IsInIsolationWindowSizeRange< SpectrumType > , IsZoomSpectrum< SpectrumType > , LevMarqFitter1D::GenericFunctor , ListUtils::DoubleTolerancePredicate_ , ROCCurve::simsortdec , MobilityPeak1D::IntensityLess , MobilityPeak1D::MobilityLess , MobilityPeak1D::PositionLess , MobilityPeak2D::IMLess , MobilityPeak2D::IntensityLess , MobilityPeak2D::MZLess , MobilityPeak2D::PositionLess , Mobilogram::RTLess , MSChromatogram::MZLess , MSExperiment::SumIntensityReduction , MSSpectrum::IMLess , MSSpectrum::RTLess , MultiplexClustering::MultiplexDistance , MzTabNucleicAcidSectionRow::RowCompare , MzTabOligonucleotideSectionRow::RowCompare , MzTabOSMSectionRow::RowCompare , MzTabPeptideSectionRow::RowCompare , MzTabProteinSectionRow::RowCompare , MzTabPSMSectionRow::RowCompare , MZTrafoModel::RTLess , OPXLDataStructs::AASeqWithMassComparator , OPXLDataStructs::CLSMScoreComparator , OPXLDataStructs::XLPrecursorComparator , OPXLHelper::PeptideIDScoreComparator , Peak1D::IntensityLess , Peak1D::MZLess , Peak1D::PositionLess , Peak2D::IntensityLess , Peak2D::MZLess , Peak2D::PositionLess , Peak2D::RTLess , PeakAlignment , PeakSpectrumCompareFunctor , PeptideHit::RankLess , PeptideHit::ScoreLess , PeptideHit::ScoreMore , PeptideHit::SequenceLessComparator , PercolatorFeatureSetHelper::lq_PeptideEvidence , PercolatorFeatureSetHelper::lq_ProteinHit , PrecursorMassComparator , ProteinHit::ProteinHitAccessionHash , ProteinHit::ProteinHitPtrAccessionHash , ProteinHit::ScoreLess , ProteinHit::ScoreMore , ReactionMonitoringTransition::NameLess , ReactionMonitoringTransition::ProductMZLess , SimpleTSGXLMS::SimplePeakComparator , SingleLinkage , SpectralMatchScoreComparator , SpectraMerger::SpectraDistance_ , SpectraSTSimilarityScore , SpectrumAlignmentScore , SpectrumCheapDPCorr , SpectrumPrecursorComparator , SteinScottImproveScore , TraceFitter::GenericFunctor , ZhangSimilarityScore , mean_and_stddev , OSSpectrumMeta::RTLess , pair_hash , hash< OpenMS::Index > , hash< OpenMS::String >
• operator*() : _Iterator< _Val, _Ref, _Ptr > , AASequence::ConstIterator , AASequence::Iterator , Adduct , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT > , DPosition< D, TCoordinateType > , EmpiricalFormula , HashGrid< Cluster >::ConstIterator , HashGrid< Cluster >::Iterator , AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT > , IntensityIteratorWrapper< IteratorT > , MatchedIterator< CONT_T, TRAIT, CONST_T > , NASequence::ConstIterator , NASequence::Iterator , Param::ParamIterator
• operator*=() : DPosition< D, TCoordinateType > , IMSIsotopeDistribution
• operator+() : AASequence::ConstIterator , AASequence::Iterator , AASequence , Adduct , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT > , DPosition< D, TCoordinateType > , EmpiricalFormula , FeatureMap , FlagSet< ENUM > , DIntervalBase< D > , MassDecomposition , NASequence::ConstIterator , NASequence::Iterator , String , TargetedExperiment
• operator++() : _Iterator< _Val, _Ref, _Ptr > , AA , AASequence::ConstIterator , AASequence::Iterator , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT > , HashGrid< Cluster >::ConstIterator , HashGrid< Cluster >::Iterator , AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT > , IntensityIteratorWrapper< IteratorT > , MatchedIterator< CONT_T, TRAIT, CONST_T > , NASequence::ConstIterator , NASequence::Iterator , Param::ParamIterator
• operator+=() : AASequence , Adduct , AnnotationStatistics , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT > , DPosition< D, TCoordinateType > , EmpiricalFormula , FeatureMap , FlagSet< ENUM > , DIntervalBase< D > , MassDecomposition , StopWatch::TimeDiff_ , String , TargetedExperiment
• operator-() : AA , AASequence::ConstIterator , AASequence::Iterator , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT > , DPosition< D, TCoordinateType > , EmpiricalFormula , FlagSet< ENUM > , DIntervalBase< D > , IntensityIteratorWrapper< IteratorT > , NASequence::ConstIterator , NASequence::Iterator , StopWatch::TimeDiff_
• operator--() : _Iterator< _Val, _Ref, _Ptr > , AASequence::ConstIterator , AASequence::Iterator , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT > , NASequence::ConstIterator , NASequence::Iterator
• operator-=() : ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT > , DPosition< D, TCoordinateType > , EmpiricalFormula , FlagSet< ENUM > , DIntervalBase< D >
• operator->() : _Iterator< _Val, _Ref, _Ptr > , AASequence::ConstIterator , AASequence::Iterator , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT > , HashGrid< Cluster >::ConstIterator , HashGrid< Cluster >::Iterator , AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT > , LogStream , MatchedIterator< CONT_T, TRAIT, CONST_T > , NASequence::ConstIterator , NASequence::Iterator , Param::ParamIterator
• operator/=() : DPosition< D, TCoordinateType >
• operator<() : AASequence , ClusterProxyKD , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT > , DateTime , DigestionEnzyme , DigestionEnzymeProtein , DPosition< D, TCoordinateType > , Element , EmpiricalFormula , FeatureFinderAlgorithmPickedHelperStructs::Seed , FLASHDeconvHelperStructs::LogMzPeak , GridBasedCluster , DBSearchParam , IteratorWrapper< Iterator > , ParentMatch , ProcessingStep , ScoreType , RNPxlFragmentAnnotationHelper::FragmentAnnotationDetail_ , ToolDescriptionInternal , IsotopeDistribution , MassDecomposition , MinimumDistance , ModificationDefinition , MzTabDouble , NASequence , PeakGroup , PeptideEvidence , PeptideHit::PeakAnnotation , ProteinIdentification::ProteinGroup , QcMLFile::Attachment , QcMLFile::QualityParameter , QTCluster , RangeStatsType , ResidueModification , Software , StopWatch , StringView , TOPPASToolVertex::IOInfo , TransformationModel::DataPoint , VersionInfo::VersionDetails
• operator<<() : DBoundingBox< D > , DistanceMatrix< Value > , IndentedStream , SVOutStream , TextFile
• operator<=() : AA , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT > , DPosition< D, TCoordinateType > , StopWatch
• operator=() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , AASequence::ConstIterator , AASequence::Iterator , AASequence , AccurateMassSearchResult , Acquisition , AcquisitionInfo , Annotations1DContainer , AnnotationStatistics , Area< N_DIM > , AverageLinkage , BaseFeature , BaseGroupFinder , BaseModel , BaseSuperimposer , BiGaussFitter1D , BiGaussModel , BinaryTreeNode , BinnedSharedPeakCount , BinnedSpectralContrastAngle , BinnedSpectrum , BinnedSpectrumCompareFunctor , BinnedSumAgreeingIntensities , Bzip2Ifstream , Bzip2InputStream , ChargePair , ChromatogramPeak , ChromatogramSettings , ClusterAnalyzer , ClusterFunctor , ClusterProxyKD , CoarseIsotopePatternGenerator , CompleteLinkage , Compomer , CompressedInputSource , ConsensusFeature , ConsensusFeature::Ratio , ConsensusIDAlgorithm , ConsensusIDAlgorithmAverage , ConsensusIDAlgorithmBest , ConsensusIDAlgorithmIdentity , ConsensusIDAlgorithmPEPIons , ConsensusIDAlgorithmPEPMatrix , ConsensusIDAlgorithmRanks , ConsensusIDAlgorithmSimilarity , ConsensusIDAlgorithmWorst , ConsensusMap::ColumnHeader , ConsensusMap , ConsensusMapNormalizerAlgorithmMedian , ConsensusMapNormalizerAlgorithmQuantile , ConsensusMapNormalizerAlgorithmThreshold , ConsoleUtils , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT > , ConstRefVector< ContainerT > , ContactPerson , ControlledVocabulary::CVTerm , ConvexHull2D , CrossLinksDB , CVMappingFile , CVMappingRule , CVMappings , CVMappingTerm , CVReference , CVTerm , CVTerm::Unit , CVTermList , CVTermListInterface , DataProcessing , DataValue , Date , DateTime , DBoundingBox< D > , DeconvolvedSpectrum , DefaultParamHandler , DIAScoring , Digestion , DigestionEnzyme , DigestionEnzymeDB< DigestionEnzymeType, InstanceType > , DigestionEnzymeProtein , DimBase , DimMapper< N_DIM > , DistanceMatrix< Value > , DocumentIdentifier , DPosition< D, TCoordinateType > , DRange< D > , EGHTraceFitter , Element , ElementDB , EmgFitter1D , EmgModel , EmpiricalFormula , EnzymaticDigestion , EuclideanSimilarity , ExperimentalSettings , ExposedVector< VectorElement > , ExtendedIsotopeFitter1D , ExtendedIsotopeModel , FalseDiscoveryRate , FASTAFile::FASTAEntry , Feature , FeatureDeconvolution , FeatureDistance , FeatureFinderAlgorithm , FeatureFinderAlgorithmPicked , FeatureGroupingAlgorithm , FeatureGroupingAlgorithmKD , FeatureGroupingAlgorithmLabeled , FeatureGroupingAlgorithmQT , FeatureGroupingAlgorithmUnlabeled , FeatureHandle , FeatureHypothesis , FeatureMap , FIAMSDataProcessor , FIAMSScheduler , File::TempDir , File::TemporaryFiles_ , Fitter1D , FlagSet< ENUM > , FLASHDeconvAlgorithm , FLASHDeconvHelperStructs::PrecalculatedAveragine , FuzzyStringComparator , GaussFitter1D , GaussModel , GaussTraceFitter , Gradient , GUILock , GzipIfstream , GzipInputStream , HPLC , IBSpectraFile , IDDecoyProbability , IDDecoyProbability::Transformation_ , IdentificationData , IDMapper , IDRipper , IMSElement , IMSIsotopeDistribution , Weights , IncludeExcludeTarget , InspectInfile , InspectOutfile , Instrument , InstrumentSettings , AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT > , AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >::Param , CachedMzMLHandler , DIntervalBase< D > , FileMapping , Identification , IdentificationHit , MappingParam , MzDataValidator , MzIdentMLDOMHandler , MzIdentMLHandler , MzIdentMLValidator , MzMLHandlerHelper::BinaryData , MzMLValidator , SemanticValidator , shared_xerces_ptr< T > , SpectrumIdentification , ToolDescription , ToolDescriptionHandler , ToolDescriptionInternal , TraMLHandler , TraMLValidator , unique_xerces_ptr< T > , InterpolationModel , IonDetector , IonSource , IsobaricChannelExtractor , IsobaricNormalizer , IsobaricQuantifier , IsobaricQuantifierStatistics , IsotopeDistribution , IsotopeFitter1D , IsotopeModel , ItraqEightPlexQuantitationMethod , ItraqFourPlexQuantitationMethod , KDTreeFeatureNode , LabeledPairFinder , LayerDataBase , LayerDataChrom , LayerDataConsensus , LayerDataFeature , LayerDataIdent , LayerDataIonMobility , LayerDataPeak , LevMarqFitter1D , LogConfigHandler , MapAlignmentAlgorithmIdentification , MapAlignmentAlgorithmPoseClustering , MapAlignmentAlgorithmTreeGuided , MapAlignmentEvaluationAlgorithm , MapAlignmentEvaluationAlgorithmPrecision , MapAlignmentEvaluationAlgorithmRecall , MascotRemoteQuery , MassAnalyzer , MassDecomposition , MassDecompositionAlgorithm , MassExplainer , MassFeatureTrace , MassTrace , MatchedIterator< CONT_T, TRAIT, CONST_T > , BasicStatistics< RealT > , BilinearInterpolation< Key, Value > , GammaDistributionFitter , GaussFitter , GumbelDistributionFitter , GumbelMaxLikelihoodFitter , Histogram< ValueType, BinSizeType > , LinearInterpolation< Key, Value > , LinearRegression , PosteriorErrorProbabilityModel , ROCCurve , Matrix< Value > , MaxLikeliFitter1D , MetaboliteFeatureDeconvolution , MetaInfo , MetaInfoDescription , MetaInfoInterface , MetaInfoInterfaceUtils , MetaInfoRegistry , MobilityPeak1D , MobilityPeak2D , Mobilogram , ModelDescription< D > , Modification , ModificationDefinition , ModificationDefinitionsSet , ModificationsDB , MRMFeature , MRMMapping , MRMTransitionGroup< ChromatogramType, TransitionType > , MRMTransitionGroupPicker , MSChromatogram , MSExperiment , MSPFile , MSSpectrum , MultiGradient , NASequence::ConstIterator , NASequence::Iterator , NASequence , NetworkGetRequest , NLargest , Normalizer , NucleicAcidSpectrumGenerator , OMSSAXMLFile , OnDiscMSExperiment , OSWFile , OSWPeakGroup , OSWPeptidePrecursor , OSWProtein , OSWTransition , Param , Param::ParamEntry , Param::ParamNode , ParameterInformation , ParamValue , Peak1D , Peak2D , PeakAlignment , PeakFileOptions , PeakGroup , PeakPickerChromatogram , PeakSpectrumCompareFunctor , PepNovoInfile , PepNovoOutfile , PeptideEvidence , PeptideHit , PeptideIdentification , PepXMLFile::AminoAcidModification , Precursor , Product , ProgressLogger , ProteinHit , ProteinIdentification , ProteinIdentification::SearchParameters , ProteinInference , QcMLFile::Attachment , QcMLFile::QualityParameter , QTCluster , RangeBase , RangeIntensity , RangeMobility , RangeMZ , RangeRT , RankScaler , ReactionMonitoringTransition , Residue , ResidueDB , ResidueModification , Ribonucleotide , RibonucleotideDB , RichPeak2D , Sample , SampleTreatment , ScanWindow , SequestInfile , SequestOutfile , SignalToNoiseEstimator< Container > , SignalToNoiseEstimatorMeanIterative< Container > , SignalToNoiseEstimatorMedian< Container > , SimpleTSGXLMS , SingleLinkage , Software , SourceFile , SpectralMatch , SpectraMerger , SpectraSTSimilarityScore , SpectrumAlignment , SpectrumAlignmentScore , SpectrumAnnotator , SpectrumCheapDPCorr , SpectrumLookup , SpectrumMetaDataLookup , SpectrumMetaDataLookup::SpectrumMetaData , SpectrumPrecursorComparator , SpectrumSettings , SqrtScaler , SteinScottImproveScore , StreamHandler , String , StringListUtils , StringView , Tagging , TargetedExperiment , Compound , Peptide , PeptideCompound , RetentionTime , TheoreticalSpectrumGenerator , TheoreticalSpectrumGeneratorXLMS , ThresholdMower , TMTEighteenPlexQuantitationMethod , TMTElevenPlexQuantitationMethod , TMTSixPlexQuantitationMethod , TMTSixteenPlexQuantitationMethod , TMTTenPlexQuantitationMethod , TOPPASEdge , TOPPASInputFileListVertex , TOPPASMergerVertex , TOPPASOutputVertex , TOPPASResource , TOPPASResources , TOPPASSplitterVertex , TOPPASToolVertex::IOInfo , TOPPASToolVertex , TOPPASVertex , TraceFitter , TransformationDescription , TransformationDescription::TransformationStatistics , TransformationModel , TVToolDiscovery , UnimodXMLFile , UniqueIdInterface , VersionInfo::VersionDetails , WindowMower , XTandemInfile , XTandemXMLFile , ZhangSimilarityScore
• operator==() : AA , AASequence::ConstIterator , AASequence::Iterator , AASequence , AbsoluteQuantitationMethod , Acquisition , AcquisitionInfo , AdductInfo , AnnotationStatistics , Area< N_DIM > , BaseFeature , BinnedSpectrum , ChargePair , ChromatogramPeak , ChromatogramSettings , ClusterProxyKD , ConsensusMap , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT > , ContactPerson , ConvexHull2D , CVMappingRule , CVMappings , CVMappingTerm , CVReference , CVTerm , CVTerm::Unit , CVTermList , CVTermListInterface , DataFilters::DataFilter , DataProcessing , DateTime , DBoundingBox< D > , DecoyHelper::DecoyStatistics , DecoyHelper::Result , DefaultParamHandler , Digestion , DigestionEnzyme , DigestionEnzymeProtein , DimBase , DimMapper< N_DIM > , DistanceMatrix< Value > , DocumentIdentifier , DPosition< D, TCoordinateType > , DRange< D > , Element , EmpiricalFormula , ExperimentalSettings , FASTAFile::FASTAEntry , Feature , FeatureHandle , FeatureMap , FeatureSummary::Result , FlagSet< ENUM > , FLASHDeconvHelperStructs::LogMzPeak , Gradient , GridBasedCluster , HashGrid< Cluster >::ConstIterator , HashGrid< Cluster >::Iterator , Hit , HPLC , AppliedProcessingStep , DBSearchParam , ObservationMatchGroup , ParentMatch , ProcessingStep , ScoreType , IdentificationSummary::Result , IMSElement , IMSIsotopeDistribution , IMSIsotopeDistribution::Peak , IncludeExcludeTarget , Index , InspectInfile , InspectOutfile , Instrument , InstrumentSettings , AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT > , DIntervalBase< D > , Identification , IdentificationHit , IntensityIteratorWrapper< IteratorT > , RNPxlFragmentAnnotationHelper::FragmentAnnotationDetail_ , SpectrumIdentification , ToolDescriptionInternal , IonDetector , IonSource , IsotopeDistribution , MassAnalyzer , MassDecomposition , MatchedIterator< CONT_T, TRAIT, CONST_T > , Histogram< ValueType, BinSizeType > , Matrix< Value > , MetaInfo , MetaInfoDescription , MetaInfoInterface , MinimumDistance , MobilityPeak1D , MobilityPeak2D , Mobilogram , ModelDescription< D > , Modification , ModificationDefinition , ModificationDefinitionsSet , MRMFeatureQC::ComponentGroupQCs , MRMFeatureQC::ComponentQCs , MSChromatogram , MSExperiment , MSSpectrum , MzTabDouble , NASequence::ConstIterator , NASequence::Iterator , NASequence , OnDiscMSExperiment , OPXLDataStructs::ProteinProteinCrossLink , Param , Param::ParamEntry , Param::ParamIterator , Param::ParamNode , Peak1D , Peak2D , PeakGroup , PeakIndex , PepNovoInfile , PepNovoOutfile , PeptideEvidence , PeptideHit , PeptideHit::PeakAnnotation , PeptideHit::PepXMLAnalysisResult , PeptideIdentification , Precursor , Product , ProteinHit , ProteinIdentification , ProteinIdentification::ProteinGroup , ProteinIdentification::SearchParameters , QcMLFile::Attachment , QcMLFile::QualityParameter , RangeBase , RangeManager< RangeBases > , RangeStatsType , ReactionMonitoringTransition , Residue , ResidueModification , Ribonucleotide , RichPeak2D , Sample , SampleTreatment , ScanWindow , SequestInfile , SequestOutfile , Software , SourceFile , SpectrumSettings , StopWatch , StopWatch::TimeDiff_ , StringView , Tagging , TargetedExperiment , Compound , Contact , CV , Instrument , Interpretation , Peptide , PeptideCompound , Prediction , Protein , Publication , RetentionTime , TraMLProduct , TIC::Result , TOPPASToolVertex::IOInfo , TransformationModel::DataPoint , UniqueIdInterface , VersionInfo::VersionDetails
• operator>() : ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT > , DPosition< D, TCoordinateType > , FLASHDeconvHelperStructs::LogMzPeak , GridBasedCluster , MinimumDistance , PeakGroup , QcMLFile::Attachment , QcMLFile::QualityParameter , StopWatch , VersionInfo::VersionDetails
• operator>=() : ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT > , DPosition< D, TCoordinateType > , StopWatch
• operator[]() : AASequence , ConstRefVector< ContainerT > , DataFilters , DeconvolvedSpectrum , DPosition< D, TCoordinateType > , ExposedVector< VectorElement > , Weights , IntensityIteratorWrapper< IteratorT > , IsotopeDistribution , KDTreeFeatureNode , MassTrace , Histogram< ValueType, BinSizeType > , Mobilogram , MSExperiment , NASequence , OnDiscMSExperiment , PeakGroup , TOPPASVertex::TOPPASFilenames
• operator|() : FlagSet< ENUM >
• operator|=() : FlagSet< ENUM >
• optimise() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
• optimize() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , MRMFeatureSelector , MRMFeatureSelectorQMIP , MRMFeatureSelectorScore
• optimize_() : LevMarqFitter1D , TraceFitter
• optimizeAnnotations_() : QTCluster
• optimizeCalibrationCurveIterative() : AbsoluteQuantitation
• optimizeCalibrationCurves() : AbsoluteQuantitation
• optimizeParameters_() : SimpleSVM
• optimizeSingleCalibrationCurve() : AbsoluteQuantitation
• optimizeTree() : KDTreeFeatureMaps
• optionalAttributeAsDouble_() : XMLHandler
• optionalAttributeAsDoubleList_() : XMLHandler
• optionalAttributeAsInt_() : XMLHandler
• optionalAttributeAsIntList_() : XMLHandler
• optionalAttributeAsString_() : XMLHandler
• optionalAttributeAsStringList_() : XMLHandler
• optionalAttributeAsUInt_() : XMLHandler
• orderBest_() : PeptideAndProteinQuant
• organizeMapWithSameIdentifier() : TargetedSpectraExtractor
• OSChromatogram() : OSChromatogram
• OSChromatogramMeta() : OSChromatogramMeta
• OSSpectrum() : OSSpectrum
• OSSpectrumMeta() : OSSpectrumMeta
• OSWFile() : OSWFile
• OSWPeakGroup() : OSWPeakGroup
• OSWPeptidePrecursor() : OSWPeptidePrecursor
• OSWProtein() : OSWProtein
• OSWTransition() : OSWTransition
• outEdgeHasChanged() : TOPPASInputFileListVertex , TOPPASToolVertex , TOPPASVertex
• outEdgesBegin() : TOPPASVertex
• outEdgesEnd() : TOPPASVertex
• outerStride() : Matrix< Value >
• outgoingEdgesCount() : TOPPASVertex
• OutOfGrid() : OutOfGrid
• OutOfMemory() : OutOfMemory
• OutOfRange() : OutOfRange
• OutputDirectory() : OutputDirectory
• outputFileWritable_() : TOPPBase
• outputFileWritten() : TOPPASOutputVertex
• outputFolderNameChanged() : TOPPASOutputVertex
• outputToStream_() : Colorizer
• outputVertexFinished() : TOPPASBase
• outsideExtractionWindow_() : ChromatogramExtractor
• overflow() : LogStreamBuf
• OverlapDetector() : OverlapDetector
• overlaps_() : PrecursorCorrection